Candidates for inclusion on the list #1

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opened 1 year ago by circlebuilder · 12 comments
Owner

This issue is for tracking of candidates to be included on the list. Best way to contribute is to create a Pull Request, but if you are unsure about your entry, then create a comment below, and we will evaluate together.

Candidates

Resources to parse

Organizations / services

  • ORCID iD - Provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher.
  • Zenodo - Helps researchers receive credit by making the research results citable.
  • OSF - A free, open platform to support your research and enable collaboration.
  • Knowledge Exchange - Enable open scholarship by supporting an information infrastructure on an international level.
  • arXiv.org - A free distribution service and an open-access archive for scholarly articles (by Cornell University).
  • Hindawi - Open Access publishing for the scientific community. Maximizing the impact of research through openness.
  • Foster Open Science - The future of science is Open.
  • I40C - Initiative for Open Citations
  • Directory of Open Access Journals
  • Translate Science

Funding

Information

FOSS software projects

Collections

Events

This issue is for tracking of candidates to be included on the list. Best way to contribute is to create a Pull Request, but if you are unsure about your entry, then create a comment below, and we will evaluate together. ## Candidates #### Resources to parse - [ ] https://scholarlykitchen.sspnet.org/2019/08/08/open-source-for-scholarly-publishing-an-inventory-and-analysis/ - [ ] https://scholarlykitchen.sspnet.org/ - [ ] https://github.com/writing-resources/awesome-scientific-writing #### Organizations / services - [ ] [ORCID iD](https://orcid.org/) - Provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher. - [ ] [Zenodo](https://about.zenodo.org/) - Helps researchers receive credit by making the research results citable. - [ ] [OSF](https://osf.io/) - A free, open platform to support your research and enable collaboration. - [ ] [Knowledge Exchange](https://www.knowledge-exchange.info/) - Enable open scholarship by supporting an information infrastructure on an international level. - [ ] [arXiv.org](https://arxiv.org/) - A free distribution service and an open-access archive for scholarly articles (by Cornell University). - [ ] [Hindawi](https://www.hindawi.com/) - Open Access publishing for the scientific community. Maximizing the impact of research through openness. - [ ] [Foster Open Science](https://www.fosteropenscience.eu/) - The future of science is Open. - [ ] [I40C](https://i4oc.org/) - Initiative for Open Citations - [ ] [Directory of Open Access Journals](https://www.doaj.org/) - [ ] [Translate Science](https://translatescience.org) #### Funding - [ ] [Open Research Funders Group](https://www.orfg.org/) #### Information - [ ] [Openness Profile](https://repository.jisc.ac.uk/7713/1/KE_Openness_Profile_-_Defining_the_Concepts_Jan_2020.pdf) (pdf): An extensive overview of strategies, barriers, and community needs regarding openness. - [ ] [Open Textbook Library](https://open.umn.edu/opentextbooks/) - Transform higher education and student learning. - [ ] [Linked Research on the Decentralised Web](https://csarven.ca/linked-research-decentralised-web) - Thesis on the feasibility of a decentralised and interoperable information space for researchers. - [ ] [The WikiLibrary Manifesto](https://www.wikimedia.de/the-wikilibrary-manifesto/) - Aims at connecting libraries and Wikimedia projects such as Wikibase in an international network of knowledge. #### FOSS software projects - [ ] [Zenodo library](https://github.com/zenodo/zenodo) - Research. Shared. - [ ] [Pubsweet](https://pubsweet.coko.foundation/) - A free, open source framework for building state-of-the-art publishing platforms. See also [platform implementations](https://coko.foundation/product-suite/). - [ ] [Manifold](https://github.com/ManifoldScholar/manifold) - Transforming scholarly publications into living digital works. - [ ] [Plaudit](https://plaudit.pub/) ([github](https://gitlab.com/Flockademic/plaudit/)) - Open endorsements from the academic community. - [ ] [Bibsonomy](https://www.bibsonomy.org/) - The easy way to manage scientific publications and bookmarks. - [ ] [Open PrePrint Systems](https://pkp.sfu.ca/ops/) - Open source preprint server for managing the posting of research papers. - [ ] [Open Journal Systems](https://pkp.sfu.ca/ojs/) - Open source software application for managing and publishing scholarly journals. #### Collections - [ ] https://github.com/softwareunderground/awesome-open-geoscience - [ ] https://github.com/pangeo-data/awesome-open-climate-science #### Events - [ ] https://openpublishingawards.org/ - [ ] https://www.openpublishingfest.org/
circlebuilder added the
help wanted
label 1 year ago
Collaborator

These are great open science initiatives, which I had expected to be still unknown by a decent group of people who should know about them. I posted these on slow new days on the Open Science Feed. The community seemed to agree.

It is still in the original Reddit format and without categorization, but maybe a starting point to talk about the limits of the list and the best system to categorize them.

Do you already know WikiCite? A community that curates citation data using the WikiData database, a database everyone can edit, just like Wikipedia.

Do you already know the #OpenAccess Tracking Project #OATP? It is a crowd-sourced social-tagging project, running on open-source software, to capture news and comment on open access.

Do you already know @hypothes_is? A web annotation system that is designed for scholars. Select text on any homepage or PDF and add a (public or private) comment. E.g., used by @ScienceFeedback to review press articles on science.

Do you know The Carpentries already? A community that teaches foundational coding, library and data science skills to researchers worldwide.

Do you know #OpenCitations? It is an independent infrastructure organization for open scholarship dedicated to the publication of open bibliographic and citation data.

Do you know @ScienceFeedback? A group of scientists fighting fake news on climate change and health. They review viral "news" stories: make detailed comments with web annotations, a summary and a quantitative assessment.

Do you know the Retraction Watch Database?

Do you already know GOSH? The Gathering for Open Science Hardware works to make scientific hardware more affordable and flexible, which will especially help the global South. They network with citizen science, maker and hack spaces.

Do you already know the OpenScience MOOC? A Massive Online Course and Community on why we do this to scholarly communication, open data, open source research software, Reproducible Research and Open Educational Resources.

Do you know Open Science Radio? A podcast from Germany with many English episodes. Learn more about #OpenScience on your commute or while walking or cleaning the house.

Do you know Octopus? A publishing platform for parts of articles: a hypothesis, a method, data, an analysis or a peer review.

Do you already know the Unpaywall browser extension? On the page of a scientific article, it will indicate whether there is a free version. Very often there is and it will link to it.

Do you know Big Blue Button? The web conferencing system designed for online learning. It fits to #OpenScience: #OpenSource, decentralized, self-hosted, no tracking (of your students).

Do you already know Peer Community In ...? They mainly review preprints in the open before they are send to journals. Most communities are in the life sciences.

Do you know the Software Preservation Network? Software is also human heritage and should be curated and preserved. This network includes public and university libraries, history of computing museums and research data archives.

Do you already know PubPeerBot? If you see an interesting comment about a scientific paper, mention PubPeerbot and the article DOI to quickly add the comment to PubPeer.

These are great open science initiatives, which I had expected to be still unknown by a decent group of people who should know about them. I posted these on slow new days on the Open Science Feed. The community seemed to agree. It is still in the original Reddit format and without categorization, but maybe a starting point to talk about the limits of the list and the best system to categorize them. [Do you already know WikiCite? A community that curates citation data using the WikiData database, a database everyone can edit, just like Wikipedia.](https://meta.wikimedia.org/wiki/WikiCite#About_WikiCite) [Do you already know the #OpenAccess Tracking Project #OATP? It is a crowd-sourced social-tagging project, running on open-source software, to capture news and comment on open access.](https://cyber.harvard.edu/hoap/OATP_introduction) [Do you already know @hypothes_is? A web annotation system that is designed for scholars. Select text on any homepage or PDF and add a (public or private) comment. E.g., used by @ScienceFeedback to review press articles on science.](https://web.hypothes.is/) [Do you know The Carpentries already? A community that teaches foundational coding, library and data science skills to researchers worldwide.](https://carpentries.org/) [Do you know #OpenCitations? It is an independent infrastructure organization for open scholarship dedicated to the publication of open bibliographic and citation data.](https://opencitations.net) [Do you know @ScienceFeedback? A group of scientists fighting fake news on climate change and health. They review viral "news" stories: make detailed comments with web annotations, a summary and a quantitative assessment.](https://sciencefeedback.co/) [Do you know the Retraction Watch Database?](https://retractionwatch.com/retraction-watch-database-user-guide/) [Do you already know GOSH? The Gathering for Open Science Hardware works to make scientific hardware more affordable and flexible, which will especially help the global South. They network with citizen science, maker and hack spaces.](https://openhardware.science/about/why-gosh/) [Do you already know the OpenScience MOOC? A Massive Online Course and Community on why we do this to scholarly communication, open data, open source research software, Reproducible Research and Open Educational Resources.](https://opensciencemooc.eu/) [Do you know Open Science Radio? A podcast from Germany with many English episodes. Learn more about #OpenScience on your commute or while walking or cleaning the house.](https://www.openscienceradio.org/category/english-episodes/) [Do you know Octopus? A publishing platform for parts of articles: a hypothesis, a method, data, an analysis or a peer review.](https://science-octopus.org/) [Do you already know the Unpaywall browser extension? On the page of a scientific article, it will indicate whether there is a free version. Very often there is and it will link to it.](https://unpaywall.org/products/extension) [Do you know Big Blue Button? The web conferencing system designed for online learning. It fits to #OpenScience: #OpenSource, decentralized, self-hosted, no tracking (of your students).](https://bigbluebutton.org/) [Do you already know Peer Community In ...? They mainly review preprints in the open before they are send to journals. Most communities are in the life sciences.](https://peercommunityin.org/) [Do you know the Software Preservation Network? Software is also human heritage and should be curated and preserved. This network includes public and university libraries, history of computing museums and research data archives.](https://www.softwarepreservationnetwork.org/about/) [Do you already know PubPeerBot? If you see an interesting comment about a scientific paper, mention PubPeerbot and the article DOI to quickly add the comment to PubPeer.](https://twitter.com/PubPeerBot)

Hi, I am the maintainer of awesome-scientific-writing. It seems there is a lot to add to this list and scientific writing (although tangentially related to open-access) may look out of place here. If you think so too, I don't mind manually mirroring it to a delightful-scientific-writing list.

Hi, I am the maintainer of [awesome-scientific-writing](https://github.com/writing-resources/awesome-scientific-writing). It seems there is a lot to add to this list and scientific writing (although tangentially related to open-access) may look out of place here. If you think so too, I don't mind manually mirroring it to a **delightful-scientific-writing** list.
Poster
Owner

A wonderful offer @ashwinvis 💙

With this are you thinking of maintaining your own list under your own account or org? The teaserbot labs lists are all directly related to topics of interest / research areas of innercircles (more lists will follow). And though for some lists - like this one - some excellent people offered to co-maintain, in other lists I am the sole maintainer and - due to overall workload - behind in maintenance tasks.

Examples of lists that are independently maintained (where I frequently PR) are delightful-databases and delightful-cli. I would love it, if you'd consider launching an independent list. If you do, then please add an issue to the delightful issue tracker and we'll take it from there.

A wonderful offer @ashwinvis 💙 With this are you thinking of maintaining your own list under your own account or org? The teaserbot labs lists are all directly related to topics of interest / research areas of [innercircles](https://innercircles.community) (more lists will follow). And though for some lists - like this one - some excellent people offered to co-maintain, in other lists I am the sole maintainer and - due to overall workload - behind in maintenance tasks. Examples of lists that are independently maintained (where I frequently PR) are [delightful-databases](https://codeberg.org/yarmo/delightful-databases/src/branch/main/README.md) and [delightful-cli](https://codeberg.org/shellowl/delightful-cli/src/main/README.md). I would love it, if you'd consider launching an independent list. If you do, then please add an issue to the [delightful issue tracker](https://codeberg.org/teaserbot-labs/delightful/issues) and we'll take it from there.
Collaborator

That is an awesome list, @ashwinvis.

There is some overlap, collaborative writing tools, reference sharing, Jupyter notebooks, but most is not directly open science.

(Except maybe for the people who claim that open science is science done right.)

My suggestion would be to link to each other. I could contribute a few collaborative writing tools I like. (Google Docs is nice, but I guess we are not allowed to mention them. :-) There are more. )

That is an awesome list, @ashwinvis. There is some overlap, collaborative writing tools, reference sharing, Jupyter notebooks, but most is not directly open science. (Except maybe for the people who claim that open science is science done right.) My suggestion would be to link to each other. I could contribute a few collaborative writing tools I like. (Google Docs is nice, but I guess we are not allowed to mention them. :-) There are more. )
Poster
Owner

My suggestion would be to link to each other.

Yes, I concur. That would be delightful.

> My suggestion would be to link to each other. Yes, I concur. That would be delightful.
Poster
Owner

Parse following toot for candidates: https://artoot.xyz/@ahanon/105644211777643689

Parse following toot for candidates: https://artoot.xyz/@ahanon/105644211777643689
Poster
Owner

No longer adding entries to first list above, due to great work of @Venema already done. Adding below:

No longer adding entries to first list above, due to great work of @Venema already done. Adding below: - [ ] [Intplanetary Publishing Protocol](https://intpub.org/) - [ ] [The Licensing Initiative for Research, Academia, and Science](https://liras.org/) - [ ] [SciFed: Draft specification for federating scientific activities using ActivityPub](https://synalp.frama.io/olki/scifed/) (see also: [AP dev watchlist](https://git.feneas.org/feneas/fediverse/-/wikis/Watchlist-for-ActivityPub-developer-resources#protocol-specifications)) - [ ] [scienceverse](https://scienceverse.github.io/scienceverse/): A Grammar of Science - [ ] [DataCite](https://datacite.org/): Locate, identify, and cite research data. - [ ] [Academic Torrents](https://academictorrents.com/): Making over 83TB of research data available. - [ ] [Stop Tracking Science](https://stoptrackingscience.eu/): Movement against science tracking that violates fundamental rights and the integrity of an open knowledge society. - [ ] [eLife Innovation Sprint](https://sprint.elifesciences.org/): The future of science publishing is in the open. - [ ] [SpendLab](https://www.spendlab.org/): Software for planning lab budgets across multiple grants. (Not OSS. Remove?)
Poster
Owner

TODO

Check all the resources above against bf7904fa49 and add missing ones.

### TODO Check all the resources above against https://codeberg.org/teaserbot-labs/delightful-open-science/commit/bf7904fa49e06962a564a34c96b6e4a1a12466f1 and add missing ones.
Collaborator

As far as I know I have considered all of the above suggestions. The ones that are not on the list did not make the cut or may have been combined with others. But, naturally feel free to disagree with my subjective choices and add more.

As far as I know I have considered all of the above suggestions. The ones that are not on the list did not make the cut or may have been combined with others. But, naturally feel free to disagree with my subjective choices and add more.
Poster
Owner

No, I fully trust the list is properly addressed :)
Closing the issue.

No, I fully trust the list is properly addressed :) Closing the issue.
circlebuilder closed this issue 4 months ago

My suggestion would be to link to each other. I could contribute a few collaborative writing tools I like. (Google Docs is nice, but I guess we are not allowed to mention them. :-) There are more. )

Suggestion implemented in https://github.com/writing-resources/awesome-scientific-writing/pull/41

> My suggestion would be to link to each other. I could contribute a few collaborative writing tools I like. (Google Docs is nice, but I guess we are not allowed to mention them. :-) There are more. ) Suggestion implemented in https://github.com/writing-resources/awesome-scientific-writing/pull/41
Poster
Owner

That's just awesome @ashwinvis thank you!

That's just awesome @ashwinvis thank you!
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