You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
Johannes Köster f945eef410 rename aux dir to auxiliary in order to make windows happy. 2 days ago
.github separate publishing for latest and release tag. 5 days ago
docs fix docs 2 days ago
examples Fix security hole in Dockerfile (#371) 2 weeks ago
images Move logos. 3 years ago
misc/vim Updated misc/vim/ to include vim-plug (#264) 2 months ago
snakemake rename aux dir to auxiliary in order to make windows happy. 2 days ago
tests issue 52 should not fail anymore 2 days ago
.dockerignore Squash docker image and fix versioneer. 1 year ago
.gitattributes Report datastructure (#305) 1 month ago
.gitignore Merged in sebastian_kurscheid/snakemake/azure_integration (pull request #378) 7 months ago
.readthedocs.yml use pip 1 year ago Add universal hello world example (#196) 4 months ago
AUTHORS.rst Starting off with Sphinx docs 3 years ago
CHANGELOG.rst update changelog 6 days ago
Dockerfile do not show mamba progress bar 2 weeks ago Updating copyrights to be until 2019 for Johannes (#67) 7 months ago Merged in chrisburr/add-licensemd-to-manifestin-1551554667600 (pull request #375) 7 months ago update changelog 6 days ago
doc-environment.yml remove bioconda channel for doc env 1 year ago Implement an on-demand caching architecture for intermediate results. (#93) 6 months ago
motoState.p Environment modules support (#159) 5 months ago
setup.cfg Add setup.cfg 2 years ago declare missing module in pkg spec 1 week ago
test-environment.yml [WIP] Adding Cloud Pipelines (#90) (#384) 2 weeks ago Use HTTPS for links where available (#325) 1 month ago

test status Sonarcloud Status Bioconda Pypi docker container status Stack Overflow Twitter Github stars


The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.


Note: Snakemake has just (Oct 4 2019) moved from to Github. Forks and stars are not yet insightful here!

Copyright (c) 2012-2019 Johannes Köster (see LICENSE)