You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
Johannes Köster 54d1e7f4fb fmt 1 week ago
.circleci fix issue #1163 3 months ago
docs fmt 1 week ago
examples applied fix in c example snakefile according to the docs 2 years ago
images Move logos. 2 years ago
misc/vim Merged in mbhall88/snakemake (pull request #400) 2 weeks ago
snakemake Add interface for defining default resources. 1 week ago
tests Gitignore, cleanup, and profiling. 1 week ago
.dockerignore Squash docker image and fix versioneer. 1 year ago
.gitattributes Setup versioneer. 1 year ago
.gitignore Gitignore, cleanup, and profiling. 1 week ago
.readthedocs.yml use pip 4 months ago
AUTHORS.rst Starting off with Sphinx docs 2 years ago
CHANGELOG.rst Merged in jomarnz/snakemake/dry-run (pull request #402) 1 week ago
Dockerfile Squash docker image and fix versioneer. 1 year ago
LICENSE.md Starting off with Sphinx docs 2 years ago
MANIFEST.in Setup versioneer. 1 year ago
README.md Update badges. 1 year ago
doc-environment.yml remove bioconda channel for doc env 4 months ago
environment.yml add missing dependency 4 weeks ago
setup.cfg Add setup.cfg 1 year ago
setup.py Syntax highlighting via pygments 1 month ago
snakemake-tutorial.html Merged in jomarnz/snakemake/dry-run (pull request #402) 1 week ago
test-environment.yml add missing dependency 4 weeks ago
versioneer.py Setup versioneer. 1 year ago

README.md

CircleCI

Snakemake - a pythonic workflow system

Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and readable specification language in Python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.

Homepage: https://snakemake.bitbucket.io

Copyright © 2012-2017 Johannes Köster johannes.koester@protonmail.com (see LICENSE)